Package index
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cancovid - Canadian Incident COVID-19 Cases
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confband() - Add confidence bands to estimated Rt or incidence curves
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configure_rt_admm() - Rt estimation algorithm configuration
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cv_estimate_rt() - Leave-kth-out cross validation for choosing a optimal parameter lambda
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delay_calculator() - Calculate the total infectiousness at each observed time point.
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discretize_gamma() - Compute the discretized density function for gamma distribution
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estimate_rt() - Estimate Rt using smoothness-penalized Poisson likelihood
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fitted(<cv_poisson_rt>) - Fitted cv_poisson_rt
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interpolate_rt() - Interpolate (or extrapolate) Rt estimates to intermediate design points
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plot(<cv_poisson_rt>) - Plot cv_poisson_rt
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plot(<poisson_rt>) - Plot estimated Rt values from a
poisson_rtobject
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plot(<rt_confidence_band>) - Plot estimated confidence bands for an estimate of Rt
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predict(<cv_poisson_rt>) - Predict observed data using estimated Rt
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predict(<poisson_rt>) - Predict observed data using estimated Rt