Plot estimated confidence bands for an estimate of Rt — plot.rt_confidence

Produces a figure showing a single estimated Rt value along with approximate confidence bands. The result is a ggplot2::ggplot(). Additional user modifications can be added as desired.

Usage

# S3 method for class 'rt_confidence_band'
plot(x, colour = "#3A448F", ...)

Arguments

x: An object of class rt_confidence_band as produced by confband().
colour: The colour of the desired plot
...: Not used.

Examples


y <- c(1, rpois(100, dnorm(1:100, 50, 15) * 500 + 1))
out <- estimate_rt(y, nsol = 10)
cb <- confband(out, out$lambda[2], level = c(0.95, 0.8, 0.5))
plot(cb)

cb_y <- confband(out, out$lambda[2], level = c(0.95, 0.8, 0.5), type = "Yt")
plot(cb_y)